Czekster Lab

cmc27
Thursday 8 September 2022


Research Centre:



Group Highlights


We have around 1013 bacteria living in our bodies, a number comparable to the amount of human cells we possess. This community of bacteria inhabiting us is called the microbiota. The human microbiota can contribute to development, outcome and response to treatment of various diseases including cancer, bacterial and viral infections.

Why do some bacteria cause disease and can “take over” environments that they wouldn’t normally occupy? How can we keep good bacteria around and get rid or control the problematic ones?

Our research combines enzymology, structural biology, chemical biology and microbiology to understand how bacteria produce and use cyclic peptides in interspecies and interkingdom warfare and/or cooperation. Our purpose is to generate novel drugs, probes, carriers, and technologies that will allow us to control and modulate bacterial populations.

Our group website: https://czeksterlab.wp.st-andrews.ac.uk/



Research


  • Antibiofilm peptides
  • Environmental microbes and antimicrobial resistance
  • Chemical biology to produce novel cyclic peptides
  • Protein degradation and recycling in bacteria
  • Mechanism of activation of nucleoside products
  • Biocatalysis

Group Members


Current lab members:

 

Clarissa Melo Czekster – Group Leader

I am from Porto Alegre, Rio Grande do Sul, Brazil, where I went to college to obtain a BSc in Molecular Biology (2001-2004), a teaching degree in Biological Sciences (2003-2005), and an MSc in Biochemistry (2006-2008) at the Federal University of Rio Grande do Sul (UFRGS). I moved to New York city for a PhD in enzymology at Albert Einstein College of Medicine with John S. Blanchard (2008-2012). After my PhD I went to Yale University to join Alanna Schepartz’s laboratory as a postdoc, working with beta-amino acids and the ribosome (2012-2014). I moved to the UK as a postdoc in Jim Naismith’s group at the University of St Andrews (2015-2017), where I worked with toxic cyclic peptides from mushroom and cyanobacteria.

Since 2017 I have been an independent research fellow in St Andrews, and in 2018 I was awarded a Sir Henry Dale Fellowship from the Wellcome Trust to establish my lab in St Andrews.

Clarissa Czekster on Google Scholar

Orcid: https://orcid.org/0000-0002-7163-4057

 

 

Christopher J. Harding – Postdoctoral fellow

I am  from Preston, where I grew up before moving to Birmingham to obtain an MSci in Biochemistry from the University of Birmingham (2010-2014). I stayed on at the University of Birmingham for my PhD (2014-2018), where I worked in the laboratory of Dr Andrew Lovering. My PhD, titled “Structural and Functional Investigations of Bdellovibrio bacteriovorus Lifecycle Proteins” involved characterising a number of unrelated protein targets. I have now moved to the University of St. Andrews to begin my first Postdoc position in the laboratory of Dr Clarissa M Czekster

Orcid: https://orcid.org/0000-0003-0388-6460

 

 

Rebecca Cornwell – Public Engagement Officer

Originally from St Andrews, I graduated from the University of Durham with a BSc (Hons) in Applied Physics (1994) followed by a PGCE (with Qualified Teacher Status) from the University of Exeter (1995). I began teaching in Dorset, moving to Cambridge and then back home to St Andrews. I obtained Full Registration with the GTCS and, as well as, returning to teaching in Fife, I have held roles including Education Tutor at St Andrews Botanic Garden. Starting from studying Open University short courses, I went on to graduate with an MRes in Environmental Biology with Distinction (Conversion Course, 2011) from the University of St Andrews. I then graduated from the University of Dundee with an MPhil in Applied Mathematics (Mathematical Biology) for a thesis entitled “The Dynamics of Natural Enemy Resistance in Aphid Populations” (2016). I am a Member of the Institute of Physics, Chartered Physicist and Member of the Royal Entomological Society. I have joined the Czekster lab as Public Engagement Officer for the “Antibiotics under our feet” project.

 

 

Peijun (Gary) Tang – Research Associate – Biocatalysis

I am from Shanghai China, where I attended a cooperation program between Shanghai University of Traditional Chinese Medicine and London Metropolitan University, obtaining a BSc in Pharmacy and Herbal Medicinal Science (2011-2015). Then I completed my MSc in Pharmaceutical Science & Medicinal Chemistry at Loughborough University (2015 – 2016). Then, I moved to Edinburgh, where I started my PhD with Prof. Campopiano’s group (2016 – 2020) funded by Edinburgh Global Research Scholarship focusing on the ‘Exploring the structure and function of key enzymes involved in microbial sphingolipid biosynthesis’. Based on the interest on enzymology, I started my first job in the Dr. Clarissa M Czekster lab in the University of St. Andrews from 2021.

Orcid: https://orcid.org/0000-0003-2647-9913

 

 

 

Charlene E. Ogilvie – PhD student

I am from Dundee, where I attended college to obtain a Higher National Certificate (HNC) in Applied Science and a Higher National Diploma (HND) in Biomedical Science. I have since completed an integrated masters in biochemistry – MBiochem (Hons) – at the University of St Andrews (2014-2019) and have chosen to stay here to complete my postgraduate studies in the laboratory of Dr Clarissa M. Czekster. My PhD project will aim to identify whether cyclic peptides influence interspecies interactions in the mouth microbiota.

 

 

 

 

 

Emmajay Sutherland – PhD student

I am originally from Motherwell, North Lanarkshire however I completed my undergraduate studies at Heriot-Watt University in Edinburgh. During my degree, I was given the opportunity to work within an industrial environment with MOF Technologies Ltd, Belfast (2017-2018). I graduated from Heriot-Watt in 2019 with an MSci in Chemistry with Industrial Experience. I have since started my postgraduate studies at the University of St Andrews with Dr Clarissa M. Czekster on a PhD project entitled “Exploiting cyclic dipeptides as novel anti-cancer therapeutics”

Orcid: https://orcid.org/0000-0001-5150-4346

 

 

 

Martha Simpson – PhD student

I am originally from Northampton in the East Midlands but moved to York in 2015 to begin my undergraduate studies in Biochemistry. As part of my degree, I undertook a year in industry at Allergan Biologics in Liverpool, where I used LC-MS to characterise antibody-based therapeutics. I (virtually) graduated from the University of York in 2020 with an MBiochem integrated masters. I have since moved to St Andrews to carry out a PhD project under the supervision of Dr Clarissa M. Czekster. My project will involve characterising bacterial and mammalian proteins which are involved in regulating protein degradation as part of the N-end rule.

 

 

 

Ngọc Anh Thư Trịnh – PhD student

I am from Viet Nam, where I completed my Bachelor’s degree in Biochemistry at Vietnam National University Ho Chi Minh City (International University) in 2018. Following that, I obtained my Master of Science degree at Newcastle University in 2020 with a graduate thesis on the effect of one-time Ciclosporin A application on adaptive immunity in patients with acute myocardial infarction. In 2021, I started my PhD at the University of St Andrews under the supervision of Dr Clarissa M. Czekster. The objective of my project is to determine the molecular requirements for the activation of various anticancer compounds developed by ProTides technology. Out of research, I also enjoy photography, travelling, and reading.

Publications

Chapters

Cyclic Peptides: From Bioorganic Synthesis to Applications: The Biosynthesis of Cyclic Peptides – RiPPs – an Overview
Melo Czekster, C. & Naismith, J. H., 1 Dec 2017, Cyclic Peptides: From Bioorganic Synthesis to Applications .
Research output: Chapter in Book/Report/Conference proceedingChapter

 

Articles

Snapshots of the reaction coordinate of a thermophilic 2'-deoxyribonucleoside/ribonucleoside transferase
Tang, P., Harding, C. J., Dickson, A., da Silva, R. G., Harrison, D. J. & Melo Czekster, C., 1 Mar 2024, In: ACS Catalysis. 14, 5, p. 3090-3102 13 p.
Research output: Contribution to journalArticlepeer-review

Unearthing new learning opportunities: adapting and innovating through the 'Antibiotics Under Our Feet' citizen science project in Scotland during COVID-19
Cornwell, R. M., Ross, K. S., Gibeily, C., Guthrie, I., Seeley, L. T., Kong, Y., True, A., Barnes, A., Nimmo, E., Len, G., Oprea, I., Lin, B., Sasi, A., Chu, V., Davidson, C., Ulasavets, D., Renouf-Bilanski, G., Dmitrieva, M., Leung, Y., Ye, Z., & 7 othersBrown, S., Vaidya, M., Hynes, J., Mullner, C., Agarwal, P., Thorley, C. & Melo Czekster, C., 7 Mar 2024, (Accepted/In press) In: Access Microbiology.
Research output: Contribution to journalArticlepeer-review

An anti-biofilm cyclic peptide targets a secreted aminopeptidase from P. aeruginosa
Harding, C. J., Bischoff, M., Bergkessel, M. & Melo Czekster, C., 1 Sept 2023, In: Nature Chemical Biology. 19, 9, p. 1158-1166 15 p.
Research output: Contribution to journalArticlepeer-review

Catalytic cycle of the bifunctional enzyme phosphoribosyl-ATP pyrophosphohydrolase/phosphoribosyl-AMP cyclohydrolase
Fisher, G., Pecaver, E., Read, B., Leese, S., Laing, E., Dickson, A., Melo Czekster, C. & da Silva, R. G., 2 Jun 2023, In: ACS Catalysis. 13, 11, p. 7669-7679 11 p.
Research output: Contribution to journalArticlepeer-review

Cyclic dipeptides and the human microbiome: opportunities and challenges
Ogilvie, C. E. & Melo Czekster, C., 15 Jul 2023, In: Bioorganic & Medicinal Chemistry. 90, 6 p., 117372.
Research output: Contribution to journalReview articlepeer-review

The novel anti-cancer fluoropyrimidine NUC-3373 is a potent inhibitor of thymidylate synthase and an effective DNA-damaging agent
Bré, J. L., Dickson, A., Read, O. J., Zhang, Y., McKissock, F. G., Mullen, P., Tang, P., Zickuhr, G. M., Melo Czekster, C. & Harrison, D. J., 31 Mar 2023, In: Cancer Chemotherapy and Pharmacology. 12 p.
Research output: Contribution to journalArticlepeer-review

Unveiling the catalytic mechanism of a processive metalloaminopeptidase
Simpson, M. C., Harding, C. J., Czekster, R., Remmel, L., Bode, B. E. & Melo Czekster, C., 4 Nov 2023, (E-pub ahead of print) In: Biochemistry. Articles ASAP, 18 p.
Research output: Contribution to journalArticlepeer-review

Active site remodelling of a cyclodipeptide synthase redefines substrate scope
Sutherland, E., Harding, C. J. & Melo Czekster, C., 25 Aug 2022, In: Communications Chemistry. 5, 1, 10 p., 101.
Research output: Contribution to journalArticlepeer-review

Structure, dynamics, and molecular inhibition of the Staphylococcus aureus m1A22-tRNA methyltransferase TrmK
Sweeney, P., Galliford, A., Kumar, A., Raju, D., Krishna, N. B., Sutherland, E., Leo, C. J., Fisher, G., Lalitha, R., Muthuraj, L., Sigamani, G., Oehler, V., Synowsky, S. A., Shirran, S. L., Gloster, T., Melo Czekster, C., Kumar, P. & da Silva, R. G., May 2022, In: Journal of Biological Chemistry. 298, 6, 15 p., 102040.
Research output: Contribution to journalArticlepeer-review

Bypassing the requirement for aminoacyl-tRNA by a cyclodipeptide synthase enzyme
Harding, C. J., Sutherland, E., Hanna, J., Houston, D. & Melo Czekster, C., 15 Jan 2021, (E-pub ahead of print) In: RSC Chemical Biology. Advance article, 11 p.
Research output: Contribution to journalArticlepeer-review

 

Other publications

Antibiotics under our feet
Cornwell, R. M., Melo Czekster, C., Gibeily, C., Ionescu, D., Harper, S., Kennedy, M., Sutherland, E. J., Simpson, M. C., Easton, E., Vaughan, R., Jones, C. E., Lynch, R., Yong, E., Athukoralage, J. S., Hogrel, G., Zickuhr, G. M., Hynes, J., Williams, R-J., Ross, K. S., Kruger, L., & 9 othersWoods, R. E., St Agatha's RC Primary School, Aberdour School, Getting Better Together Shotts, 8th Fife (St Andrews) Cub Scouts, St Andrews Botanic Garden, Nuffield Research Placements, Thornton Primary School & Greyfriars Primary School, St Andrews, 25 Apr 2023, Antibiotics under our feet.
Research output: Other contribution

Erratum: Bypassing the requirement for aminoacyl-tRNA by a cyclodipeptide synthase enzyme (RSC Chem. Biol. (2021) 2 (230-240) DOI: 10.1039/D0CB00142B)
Harding, C. J., Sutherland, E., Hanna, J. G., Houston, D. R. & Czekster, C. M., Jun 2021, In: RSC Chemical Biology. 2, 3, p. 942-943 2 p.
Research output: Contribution to journalComment/debatepeer-review

DESIGNER RIBOSOMES AND METHODS OF USE THEREOF FOR INCORPORATING NON-STANDARD AMINO ACIDS INTO POLYPEPTIDES
Melo Czekster, C., Schepartz, A. & Robertson, W., 24 Jan 2019
Research output: Patent

 



Contact

[email protected]

Biomedical Sciences Research Complex
School of Biology
University of St Andrews
North Haugh, St Andrews KY16 9ST


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