Evolutionary Developmental Genomics (EDGe) Group

dekf
Thursday 8 September 2022


Research Centre:



Group Highlights


We aim to understand how the diversity of animal form develops and evolved. The focus of our research is the connection between the content and organisation of genomes to the evolution of development (evo-devo).  The homeobox-containing genes of the Hox gene cluster have been a corner-stone of Evolutionary Developmental Biology, but much about cluster organisation and mode of operation remains unknown.

Also the Hox system is not unique as a gene cluster controlling animal development, further homeobox gene clusters being the ParaHox and NK clusters, all of which evolved within larger arrays of homeobox genes (the Mega-cluster, Giga-cluster and Super-Hox cluster). In addition to these issues of gene/genome organisation much of evo-devo has also involved changes to gene content (gene gains and losses) as well as redeployment into new roles.

We utilize a variety of organisms in our research (including amphioxus, sea squirts, polychaetes and priapulids), chosen from key points in the phylogeny of the animals to enable reconstruction of the ancestral conditions at major nodes in the animal kingdom; the origin of bilaterians, protostomes, deuterostomes, chordates and vertebrates, as well as the origin of the entire animal kingdom. Knowledge of such ancestors is vital in understanding subsequent diversification.



Research


Research

Reconstruction of the Urbilaterian Super-Hox cluster (adapted from Butts et al (2008) TiGs 24,259-62).

We aim to understand how the diversity of animal form develops and evolved. The focus of our research is the connection between the content and organisation of genomes to the evolution of development (evo-devo).

Group Members


People

PI:

Dr David E.K. Ferrier
(e-mail [email protected])

Biography:

2017 – present: Reader in Biology, and Deputy Director of The Scottish Oceans Institute, University of St Andrews, UK

2015 – 2017: Senior Lecturer in Biology. The Scottish Oceans Institute, University of St Andrews, UK

2012 – 2015: Lecturer in Biology. The Scottish Oceans Institute, University of St Andrews, UK

2007 – 2012: RCUK Fellow in Marine Biology. The Scottish Oceans Institute, University of St Andrews, UK

2003-2007: Departmental Lecturer in Animal Diversity
Department of Zoology, University of Oxford, UK

1999-2003: Postdoctoral Research Fellow in the lab of Prof. Peter Holland
University of Reading, UK

1997-1998: EC Marie Curie TMR Postdoctoral Fellow in the lab of Dr. Jordi Garcia-Fernàndez
University of Barcelona, Spain

1991-1995: PhD and
1995-1996: Wellcome Research Associate with Prof. Michael Akam
University of Cambridge, UK

Present group members:

Dr Nuria P Torres-Aguila

Postdoctoral Research Fellow

(e-mail: [email protected])

Research: Diversification of TCF family genes

Biography:

2020 – present: Postdoctoral research fellow, University of St Andrews, UK.

2016-2019: PhD in Genetics, Faculty of Biology, University of Barcelona, Spain; in agreement with ‘Vall d’Hebron’ Research institute (VHIR) and ‘Fundació Docència i Recerca Mútuta Terrassa’ (FMT).

PhD project: Massive genetic studies in ischemic stroke: factors of risk and outcome (Supervisor: Dr Israel Fernandez-Cadenas).

2015-2016: Specialized technician in charge of laboratory cultures of marine chordates and microalgae in Dr. Albalat and Dr. Cañestro’s laboratory.

2014-2015: Master in Genetics and Genomics, Faculty of Biology, University of Barcelona, Spain.

Honours project: Genetic analysis of the developmental alterations of Oikopleura dioica caused by toxins produced in the blooms of diatoms associated with the global warming (Co-supervisors: Prof Ricard Albalat & Dr Cristian Cañestro).

2010-2014: Bachelor’s Degree in Biotechnology, Faculty of Biology, University of Barcelona, Spain.

Honours project: Study of the production and toxicity of mircoalgae during the culture of Oikopleura dioica (Co-supervisors: Prof Ricard Albalat & Dr Cristian Cañestro).

 

Miss Madeleine Aase-Remedios

PhD student

(e-mail: [email protected])

Research: The role of gene and genome duplications in animal evolution.

Biography:

2018 – present: PhD, University of St Andrews

2014 – 2018: BSc Hons. Evolutionary Biology, University of Edinburgh

Honours project: Statistical analysis of incisor abnormalities and late-life fitness in wild Soay sheep.

2017: BBSRC EASTBIO REP summer internship, University of St Andrews. Metazoa-wide survey of SINE/Six gene family of homeobox transcription factors

Miss Anastasia EllisPhD student

(email: [email protected])

2020- present: BBSRC EASTBIO DTP PhD, University of St Andrews, UK

PhD title: ParaHox gene regulation in the chordates

2016-2020: BSc Biochemistry, University of St Andrews, UK

2018-2020: Laidlaw Scholar Undergraduate student

Publications

service temporarily unavailable

service temporarily unavailable

service temporarily unavailable

service temporarily unavailable

service temporarily unavailable

service temporarily unavailable

No publications returned within given parameters for the person dekf



Contact

Dr David E.K. Ferrier
(e-mail [email protected])



Related themes:

Related Centre: